Einkorn Apple Cinnamon Muffins (Naturally Sweetened)

Apple cinnamon einkorn muffins with walnut cinnamon sugar crumble topping


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These cozy Apple Cinnamon Muffins are made with wholesome einkorn flour, naturally sweetened with pure maple syrup, and filled with fresh grated apples for a tender, flavorful crumb. Each muffin is finished with a crunchy walnut cinnamon-sugar topping that adds the perfect touch of warmth and texture — a comforting fall treat you’ll want to bake all year long.

Apple cinnamon einkorn muffins interior crumn

There’s something special about the smell of apple and cinnamon baking in the oven, it instantly fills your kitchen with the comforting aroma of fall. Whether you’re new to baking with einkorn or it’s already a pantry staple, these Apple Cinnamon Muffins are a simple recipe you’ll find yourself making again and again.

Einkorn flour gives these muffins a tender crumb and a slightly nutty flavor that pairs beautifully with the warm spices and juicy apples. Because einkorn absorbs liquid differently than modern wheat, the grated apple helps keep the muffins moist without needing a lot of added fat or sugar. It’s a small tweak that makes a big difference in both texture and nutrition.

These muffins are delicious fresh out of the oven, but they also stay soft and moist for several days, making them perfect for busy mornings, school snacks, or a wholesome afternoon pick-me-up.

If you love these muffins, be sure to try my Einkorn Banana Muffins with Walnuts and Chocolate Chips or Einkorn Pumpkin Muffins. Both are naturally sweetened with maple syrup and have the same soft, tender texture you’ll love.

Apple cinnamon einkorn muffins with walnut crumble topping

Ingredient’s You’ll Need For Einkorn Apple Muffins

Ingredient list for einkorn apple muffins
  • Einkorn flour: All-purpose einkorn flour, the key here is accurate measurements! Using a food scale to measure out exact grams is best, but if you don’t have one, spoon and level the flour. 
  • Baking powder
  • Baking soda
  • Salt: Use a fine grain sea salt.
  • Cardamon
  • Cinnamon
  • Melted butter: I like to use salted butter, but if you don’t have salted butter add an extra 1/8 tsp of fine grain sea salt to batter.
  • Maple syrup
  • Eggs
  • Grated apples: Choose a sweet apple like Honeycrisp, Gala or Fuji.
  • Vanilla extract

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Step-By-Step How to Make These Einkorn Apple Cinnamon Muffins


1

Prep Dry and Wet Ingredients

In a medium bowl, whisk together your dry ingredients; einkorn flour, baking powder, cinnamon, cardamom, baking soda, and fine grain sea salt. Set aside. In a separate medium bowl combine wet ingredients, cooled melted butter, maple syrup, eggs, vanilla extract. Mix until well combined and smooth.


2

Fold in Apples

Fold grated and very lightly squeezed apples.


3

Combine Dry and Wet

Add dry ingredient mixture to the wet ingredients mixture. Gently mix with a dough hook whisk or spatula until just combined. Do not overmix. Set aside to let the batter rest.


4

Make Topping

While the batter rests, make the crumb topping. To a bowl combine crumb topping ingredients and mix until course sand/crumbles form.


5

Fill Muffin Tins and Bake

Preheat oven to 350 degrees Fahrenheit. Line a 12-cup standard muffin tin with paper liners, then evenly divide the batter among the cups. Sprinkle the crumble topping over each muffin and bake for 16–20 minutes, until the tops are golden and a toothpick inserted in the center comes out clean or with a few crumbs.

Helpful Tips

  • Lightly squeeze excess juice (only if very wet).
    If your grated apples are extremely juicy, gently press out some liquid. Too much moisture can make the muffins gummy, especially with einkorn’s softer gluten.
  • Measure precisely: Use a food scale and add your ingredients directly into your bowl, this is a more precise and accurate way of measuring that will produce the best results every time.

FAQ’s

Where to buy einkorn flour?

With einkorn flour gaining popularity it has become much easier to source it locally at more grocery and specialty stores. I like the consistency of jovial einkorn flour. It typically weighs close to 120 grams per cup which makes it easy for beginners just getting started, especially if you aren’t actively using a scale to measure your flour. 

I also, am a huge fan of farm2flour brand as it is freshly milled, within 7 days of being shipped to your house, it smells and tastes amazing, and I find it to be a better bang for your buck especially because you can subscribe or buy in bulk to avoid shipping costs. The more you buy, the better the price per pound. For instance, a 5lb bag of their einkorn is $3.40 per pound, compared to $5.12 per pound for the 2lb bag. I’ve found that ordering 30lbs at a time offers the best deal with free shipping on anything over $99. 

Cooking with Einkorn flour is usually pretty straightforward, often being a 1:1 or sometimes a 1:1.25 replacement for regular all-purpose flour in most recipes, but there are some notable differences to keep in mind if your recipe isn’t producing the quality product you’d like. Einkorn flour is more dense than regular flour due to its low gluten content, it absorbs less fat and liquids than modern wheat flours and at a much slower absorption rate. The adjustment of liquid may be necessary in some recipes, especially those that require refrigeration. 

How do I keep a crunchier topping?

This recipe uses both coconut sugar and maple sugar in the crumble topping to keep it refined sugar–free and naturally sweetened. These sugars give a rich, caramel-like flavor, but they tend to soften at room temperature.

If you prefer a crunchier topping that holds up longer, replace either the coconut sugar or the maple sugar with granulated sugar. Granulated sugar caramelizes and hardens slightly as it bakes, creating a crisp texture that lasts. For best results, allow the muffins to cool completely before storing, and keep them loosely covered—too much trapped moisture can soften the topping.

Coconut sugar and maple sugar naturally contain more moisture and have a lower melting point than granulated sugar. While they add depth of flavor, they absorb humidity from the air over time, which is why the crumble topping made entirely with them will soften more quickly.

What type of apples should I use?

I recommend a sweet apple like honeycrisp, gala or fuji. Avoid tart apples, such as granny smith. 

Can I substitute apple sauce in replace of fresh apples?

Yes, you can substitute applesauce for the shredded apples, use about ½ cup of applesauce in place of the shredded apple. However, fresh shredded apples provide a stronger, more vibrant apple flavor and are highly recommended for the best results in this recipe.

More Einkorn Muffin Recipes

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Apple cinnamon einkorn muffins with walnut cinnamon sugar crumble topping

Einkorn Apple Cinnamon Muffins

Jennifer Hall
These apple cinnamon einkorn muffins are soft, cozy, and perfectly spiced for fall mornings. Naturally sweetened with maple syrup and filled with fresh grated apples, each bite has a warm, comforting flavor. A buttery cinnamon-walnut crumble on top adds the perfect sweet crunch, making these muffins a wholesome treat for breakfast or an afternoon snack.
5 from 2 votes
Prep Time 10 minutes
Cook Time 18 minutes
Rest Batter 10 minutes
Total Time 30 minutes
Course Breakfast
Cuisine American
Servings 12 Muffins

Equipment

Ingredients
  

  • 210g (1¾ cups) Einkorn flour all purpose
  • 2 tsp Baking powder
  • 1.5 tsp Ground cinnamon powder
  • ¼ tsp Cardamon powder
  • ¼ tsp Baking soda
  • 3g (½ tsp) Fine sea salt
  • 113g (½ cup) Melted butter salted slightly cooled
  • 150g (½ cup) Maple syrup
  • 90g (½ cup) Grated/shredded apple packed and lightly squeezed of excess liquid.
  • 2 large Eggs
  • 2 tsp Vanilla extract

Crumble Topping

  • ¼ cup Chopped walnuts
  • 28g (2 tbsp) Melted butter
  • 2 tbsp Coconut sugar
  • 2 tbsp Maple sugar or Granulated For a crunchier topping use granulated sugar
  • ½ tbsp Cinnamon powder
  • 3 tbsp Einkorn Flour

Instructions
 

  • Preheat and prep: Preheat your oven to 350°F (175°C). Line a 12-cup muffin pan with paper liners or lightly grease with butter or oil.
  • Mix the dry ingredients: In a medium bowl, whisk together einkorn flour, baking powder, cinnamon, cardamom, baking soda, and fine sea salt. Set aside.
  • Combine the wet ingredients: In a large mixing bowl, whisk together the cooled melted butter, maple syrup, eggs, and vanilla extract until smooth.
  • Add the apples: Fold the grated apple into the wet ingredients until evenly distributed.
  • Mix wet and dry ingredients: Add the dry ingredients to the wet mixture and stir gently until just combined. Do not overmix, einkorn flour absorbs liquid slowly and will thicken as it rests.
  • Make the crumble: As the batter rests, combine chopped walnuts, melted butter, coconut sugar, maple sugar, einkorn flour and cinnamon to a bowl. Use a fork or hands to mix until course crumbles form.
  • Fill the muffin cups: Evenly scoop the batter between all 12 cups.
  • Add the crumble topping: Sprinkle the cinnamon walnut filling evenly over the tops of each muffin.
  • Bake: Bake for 16–20 minutes, or until a toothpick inserted in the center comes out with a few crumbs.
Keyword apple cinnamon einkorn muffins, einkorn apple cinnamon muffins, Einkorn apple muffins, einkorn applesauce muffins, maple sweetened einkorn muffins, naturally sweetened einkorn muffins
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4 Comments

  1. 5 stars
    These were so tasty! I used carrot instead of apple, coconut oil instead of butter, and instead of making crumble for the top I just put a pinch of coconut sugar on top.
    They turned out so good!
    Next time when I have all the ingredients, I’ll make it properly and I feel like I can be very confident in how good it will turn out!

  2. 5 stars
    Just made these exactly as stated and my son and husband absolutely loved them! There’s only a few left and they already want me to make another batch! Definitely a keeper and will be part of my permanent recipe collection!

5 from 2 votes

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